Please find links to our publications below

Microbiome Publications:

Ultra-accurate Microbial Amplicon Sequencing with Synthetic Long Reads - Microbiome, Jun. 2021

Accurate Microbiome Sequencing with Synthetic Long Read Sequencing

Assessment of commercial companion animal kefir products for label accuracy of microbial composition and quantity

The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology - Scientific Reports, Jan. 2021

Development of a human skin commensal microbe for bacteriotherapy of atopic dermatitis and use in a phase 1 randomized clinical trial - Nature Medicine, Feb. 2021

Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes - Frontiers in Microbiology, March. 2021

FODMAP Fingerprinting of Bakery Products and Sourdoughs: Quantitative Assessment and Content Reduction through Fermentation - Foods, April 2021

Commercial kefir products assessed for label accuracy of microbial composition and density - JDS Communications, May 2021

Full-length SSU rRNA Gene Sequencing Allows Species-Level Detection of Bacteria, Yeasts, and Archaea Present in Milk - Microorganisms, Jun 2021

Coleofasciculaceae, a monophyletic home for the Microcoleus steenstrupii complex and other desiccation-tolerant filamentous cyanobacteria - Journal of Phycology, July 2021

Sex-Specific Effects of Dietary Methionine Restriction on the Intestinal Microbiome - Nutrients, August 2021

Effects of Waterlogging on Soybean Rhizosphere Microbial Community Profiled Using Illumina MiSeq, LoopSeq, and PacBio 16S rRNA Genes Sequences - Research Square, August 2021

Polysaccharides Obtained from Cordyceps militaris Alleviate Hyperglycemia by Regulating Gut Microbiota in Mice Fed a High-Fat/Sucrose Diet - Foods, August 2021

Spatial and temporal dynamics of microbiomes and resistomes in broiler litter stockpiles - Computational and Structural Biology, Nov. 2021

Effects of Waterlogging on Soybean Rhizosphere Bacterial Community Using V4, LoopSeq, and PacBio 16S rRNA Sequence - Microbiology Spectrum, Feb. 2022

Bacterial diversity of Gambian traditional fermented milk, “Kosam” - Animal Science Journal, Feb. 2022

Mycobiome Publications:

Histopathology of laboratory-reared Nothobranchius fishes: Mycobacterial infections versus neoplastic lesions. Journal of Fish Diseases, April 2021

Virology Publications:

Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing - Nature, Nov. 2020

An Integrated Sequencing Approach for Updating the Pseudorabies Virus Transcriptome - Pathogens, March  2021

Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach. Frontiers in Genetics, April 2021 

Time course profiling of host cell response to herpesvirus infection using nanopore and synthetic long-read transcriptome sequencing. Scientific Reports. July 2021

Wastewater-Based Epidemiology and Long-Read Sequencing to Identify Enterovirus Circulation in Three Municipalities in Maricopa County, Arizona, Southwest United States between June and October 2020 - Viruses, Sept. 2021

Transcriptome Publications:

Targeted Transcriptome Analysis using Synthetic Long Read Sequencing Uncovers Isoform Reprograming in the Progression of Colon Cancer. Nature Communications, April 2021

A Single-Molecule Long-Read Survey of Human Transcriptomes using LoopSeq Synthetic Long Read Sequencing

Cyst Cells Control Germ Cell Progenitor Numbers Via the Phagocytic Receptor Draper. Developmental Cell, April 2021